S.S. Satapathy, A.K. Sahoo, S.K. Ray and T.C. Ghosh, "Codon degeneracy and amino acid abundance influence the measures of codon usage bias: improved Nc and ENCprime measures", Genes to cells 22:277–283
S.S.Satapathy, B.R.Powdel, A.K.Buragohain and S.K.Ray, "Discrepancy among the synonymous codons with respect to their selection as optimal codon in bacteria", DNA Res. 23 (5): 441-449. 2016
V. J. Baruah, S. S. Satapathy, B. R. Powdel, R. Konwarh, A. K. Buragohain and S. K. Ray, "Comparative analysis of codon usage bias in Crenarchaea and Euryarchaea genome reveals differential preference of synonymous codons to encode highly expressed ribosomal and RNA polymerase proteins", J. Genet. 95(3), 537-549. 2016
S.S. Satapathy, S.K. Ray, A.K. Sahoo, T. Begum, T.C. Ghosh, "Codon Usage Bias is not Significantly Different between the High and the Low Expression Genes in Human", Int J Mol Genet Gene Ther 1(1).2015: doi http://dx.doi.org/10.16966/ijmggt.103.
V.K. Prajapati, S.S. Satapathy, MV Satish Kumar, A.K. Buragohain and S.K. Ray, "Evidences indicating the involvement of selection mechanisms for the occurrence of C34 anticodon in bacteria", J Cell Sci Molecul Biol. 2(1): 112.2015.
S.K. Ray, V.J. Baruah, S.S.Satapathy and R.Banarjee, "Co-translational protein folding is revealing the selective use of synonymous codons along the coding sequence of a low expression gene", J. Genet. 93, 613-617. 2014.
S.S.Satapathy, B.R.Powdel, M. Dutta, A.K.Buragohain and S.K.Ray, "Selection on GGU and CGU codons in the high expression genes in bacteria", J Mol. Evol., 78:13-23. 2014
S.S.Satapathy, B.R.Powdel, M. Dutta, A.K.Buragohain and S.K.Ray, "Constraint on di-nucleotides by codon usage bias in bacterial genomes", Gene, 536: 18-28. 2014
S.S.Satapathy, M. Dutta, A.K.Buragohain and S.K.Ray, "Transfer RNA gene numbers may not be completely responsible for the codon usage bias in asparagine, isoleucine, phenylalanine and tyrosine in the high expression genes in bacteria", J Mol. Evol., 75:34-42. 2012
S.S.Satapathy, M. Dutta and S.K.Ray, "Variable correlation of genome GC% with transfer RNA number as well as with transfer RNA diversity among bacterialgroups: alpha-Proteobacteria and Tenericutes exhibit strong positive correlation", Microbiol Res., 165:232-242. 2010
S.S.Satapathy, M. Dutta and S.K.Ray, "Higher tRNA Diversity in Thermophilic Bacteria: A Possible Adaptation to Growth at High Temperature", Microbiol Res., 165:609-616. 2010
B.R.Powdel, M.Borah and S.KRay, "Strand specific mutational bias influences codon usage of weakly expressed genes in Escherichia coli", . Genes to Cells. 15:773-782. 2009
B.R.Powdel, S.S.Satapathy, A. Kumar, P.K.Jha, A.K.Buragohain, M.Borah and S.K.Ray, "A Study in Entire Chromosomes of Violations of the Intra-strand Parity of Complementary Nucleotides (Chargaff's Second Parity Rule)", DNA Res., 16:325-343. 2009
D.Das, S.S.Satapathy, A.K.Buragohain and S.K.Ray, "Occurrence of all nucleotide combinations at the third and the first positions of two adjacent codons in open reading frames of bacteria", Current Science, Vol. 90, No. 1, 10 January 2006
S.K.Verma, D.Das, S.S.Satapathy, A.K.Buragohain and S.K.Ray, "Compositional symmetry of DNA duplex in bacterial genomes", Current Science, Vol. 89, No. 2, 25 July 2005
S.S.Satapathy, B.R.Powdel, M. Dutta, A.K.Buragohain and S.K.Ray, "Constraint on genome signature by coding sequences in bacterial genomes", International Conference on Biomolecular Forms and Functions, Bangalore 08-13 January 2013
S.S.Satapathy, M. Dutta, S. K. Ray, "Predicting gene expression from unevenness in codon usage", International Conference & Exhibition on Proteomics & Bioinformatics, Hyderabad 06-08 June 2011
B.R.Powdel, A.Kumar, P.K.Jha, S.S.Satapathy, A.K.Buragohain, M.Borah and S.K.Ray, "Frequency Distribution of Complementary Nucleotides and Intra-strand Parity in Chromosomes: a Novel Approach to the Parity Rule II", 16th Annual International Conference Intelligent Systems for Molecular Biology, Toronto, Canada, July 19-23 2008
B.R.Powdel, M.Borah, S.S.Satapathy and S.K.Ray, "A quadratic relationship of altered GC content with the genome G+C % in bacteria: a quantitative study using discrete probability distribution", BioConvene, International conference on bioinformatics & drug discovery, University of Hyderabad, 20-22nd December, 2007